miRBase entry: pte-mir-2c

Stem-loop pte-mir-2c


Accession
MI0038045
Description
Parasteatoda tepidariorum pte-mir-2c precursor miRNA

Literature search
2 open access papers mention pte-mir-2c
(17 sentences)

Sequence

UCAUCAAAUUGGCAGUGAUCUGuuacauuugaaucaUAUCACAGCCAUCUUGAUGAUC
(((((((..((((.(((((.((............)).))))).))))..)))))))..

Structure
--       AU    A     C  uuaca 
  UCAUCAA  UGGC GUGAU UG     u
  |||||||  |||| ||||| ||      
  AGUAGUU  ACCG CACUA ac     u
CU       CU    A     U  uaagu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_5995: 356792-356849 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-2c-5p

Accession MIMAT0046141
Description Parasteatoda tepidariorum pte-miR-2c-5p mature miRNA
Sequence 1 - UCAUCAAAUUGGCAGUGAUCUG - 22
Evidence experimental
Illumina [1]

Mature pte-miR-2c-3p

Accession MIMAT0046142
Description Parasteatoda tepidariorum pte-miR-2c-3p mature miRNA
Sequence 37 - UAUCACAGCCAUCUUGAUGAUC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144