Stem-loop sequence pte-mir-2c

Accession

MI0038045 (change log)

Description

Parasteatoda tepidariorum miR-2c stem-loop

Literature search

2 open access papers mention pte-mir-2c
(17 sentences)

Stem-loop

   --       au    a     c  uua a 
5'   ucaucaa  uggc gugau ug   c u
     |||||||  |||| ||||| ||   |  
3'   aguaguu  accg cacua ac   g u
   cu       cu    a     u  uaa u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates: Scf5bK3_5995: 356792-356849 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-2c

• pte-mir-71-1: Scf5bK3_5995: 356520-356577 [+]
• pte-mir-2e: Scf5bK3_5995: 356661-356719 [+]
• pte-mir-2c: Scf5bK3_5995: 356792-356849 [+]
• pte-mir-2b-2: Scf5bK3_5995: 359128-359188 [+]
• pte-mir-2g-2: Scf5bK3_5995: 359230-359289 [+]
• pte-mir-2g-1: Scf5bK3_5995: 359336-359391 [+]
• pte-mir-2d: Scf5bK3_5995: 359448-359508 [+]

Database links

• miRBase Tracker:MI0038045

Mature sequence pte-miR-2c-5p

• Accession: MIMAT0046141
• Sequence: 1 - ucaucaaauuggcagugaucug - 22
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-2c-3p

• Accession: MIMAT0046142
• Sequence: 37 - uaucacagccaucuugaugauc - 58
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).