Stem-loop pte-mir-2d

Accession

MI0038046

Description

Parasteatoda tepidariorum pte-mir-2d precursor miRNA

Literature search

2 open access papers mention pte-mir-2d
(17 sentences)

Sequence

GGGUCAAACUGAUGCUGUGAUGUGuaaauucuucaucaUAUCACAGCCAGCUUUGAUGAGC
..(((((((((..(((((((((((............)))))))))))))).))))))....

Structure

--GG      -   AU           uaaau 
    GUCAAA CUG  GCUGUGAUGUG     u
    |||||| |||  |||||||||||      
    UAGUUU GAC  CGACACUAUac     c
CGAG      C   --           uacuu 

Annotation confidence Not enough data

Genome context

Scf5bK3_5995: 359448-359508 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from pte-mir-2d

Mature pte-miR-2d-5p

• Accession: MIMAT0046143
• Description: Parasteatoda tepidariorum pte-miR-2d-5p mature miRNA
• Sequence: 1 - GGGUCAAACUGAUGCUGUGAUGUG - 24
• Evidence: experimental ; Illumina [1]

Mature pte-miR-2d-3p

• Accession: MIMAT0046144
• Description: Parasteatoda tepidariorum pte-miR-2d-3p mature miRNA
• Sequence: 39 - UAUCACAGCCAGCUUUGAUGAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144