miRBase entry: pte-mir-2e

Stem-loop pte-mir-2e


Accession
MI0038047
Description
Parasteatoda tepidariorum pte-mir-2e precursor miRNA

Literature search
2 open access papers mention pte-mir-2e
(17 sentences)

Sequence

ACGUCGAAGUGGCUGUGAAAUGuauucacuuuaccaUAUCACAGCUAUCUUUGACGUGU
((((((((((((((((((.(((((.......)).))).))))))))).)))))))))..

Structure
--         -         A   -  uu 
  ACGUCGAAG UGGCUGUGA AUG ua  c
  ||||||||| ||||||||| ||| ||  a
  UGCAGUUUC AUCGACACU Uac au  c
UG         U         A   c  uu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_5995: 356661-356719 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-2e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-2e-5p

Accession MIMAT0046145
Description Parasteatoda tepidariorum pte-miR-2e-5p mature miRNA
Sequence 1 - ACGUCGAAGUGGCUGUGAAAUG - 22
Evidence experimental
Illumina [1]

Mature pte-miR-2e-3p

Accession MIMAT0046146
Description Parasteatoda tepidariorum pte-miR-2e-3p mature miRNA
Sequence 37 - UAUCACAGCUAUCUUUGACGUGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144