miRBase entry: pte-mir-2f

Stem-loop pte-mir-2f


Accession
MI0038048
Description
Parasteatoda tepidariorum pte-mir-2f precursor miRNA

Literature search
2 open access papers mention pte-mir-2f
(17 sentences)

Sequence

CGUCGAAUGUGCUCUGUGAAAUGuguuguuucuccauaucaUAUCACAGCCACAUUUGAUGCGC
(((((((((((..((((((.(((...((......))...))).)))))).)))))))))))...

Structure
---           CU      A   ugu  uu 
   CGUCGAAUGUG  CUGUGA AUG   ug  u
   |||||||||||  |||||| |||   ||   
   GUAGUUUACAC  GACACU Uac   ac  c
CGC           -C      A   uau  cu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_595: 730975-731038 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from pte-mir-2f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-2f-5p

Accession MIMAT0046147
Description Parasteatoda tepidariorum pte-miR-2f-5p mature miRNA
Sequence 1 - CGUCGAAUGUGCUCUGUGAAAUG - 23
Evidence experimental
Illumina [1]

Mature pte-miR-2f-3p

Accession MIMAT0046148
Description Parasteatoda tepidariorum pte-miR-2f-3p mature miRNA
Sequence 42 - UAUCACAGCCACAUUUGAUGCGC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144