Stem-loop sequence pte-mir-2f

Accession

MI0038048 (change log)

Description

Parasteatoda tepidariorum miR-2f stem-loop

Literature search

2 open access papers mention pte-mir-2f
(17 sentences)

Stem-loop

   ---           cu      a   ugu  uu 
5'    cgucgaaugug  cuguga aug   ug  u
      |||||||||||  |||||| |||   ||   
3'    guaguuuacac  gacacu uac   ac  c
   cgc           -c      a   uau  cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_595: 730975-731038 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-2f

• pte-mir-71-2: Scf5bK3_595: 731101-731161 [-]
• pte-mir-2f: Scf5bK3_595: 730975-731038 [-]
• pte-mir-2a: Scf5bK3_595: 726238-726302 [-]
• pte-mir-2b-1: Scf5bK3_595: 726122-726186 [-]

Database links

• miRBase Tracker:MI0038048

Mature sequence pte-miR-2f-5p

• Accession: MIMAT0046147
• Sequence: 1 - cgucgaaugugcucugugaaaug - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-2f-3p

• Accession: MIMAT0046148
• Sequence: 42 - uaucacagccacauuugaugcgc - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).