Stem-loop pte-mir-2f

Accession

MI0038048

Description

Parasteatoda tepidariorum pte-mir-2f precursor miRNA

Literature search

2 open access papers mention pte-mir-2f
(17 sentences)

Sequence

CGUCGAAUGUGCUCUGUGAAAUGuguuguuucuccauaucaUAUCACAGCCACAUUUGAUGCGC
(((((((((((..((((((.(((...((......))...))).)))))).)))))))))))...

Structure

---           CU      A   ugu  uu 
   CGUCGAAUGUG  CUGUGA AUG   ug  u
   |||||||||||  |||||| |||   ||   
   GUAGUUUACAC  GACACU Uac   ac  c
CGC           -C      A   uau  cu 

Annotation confidence Low

Genome context

Scf5bK3_595: 730975-731038 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pte-mir-2f

Mature pte-miR-2f-5p

• Accession: MIMAT0046147
• Description: Parasteatoda tepidariorum pte-miR-2f-5p mature miRNA
• Sequence: 1 - CGUCGAAUGUGCUCUGUGAAAUG - 23
• Evidence: experimental ; Illumina [1]

Mature pte-miR-2f-3p

• Accession: MIMAT0046148
• Description: Parasteatoda tepidariorum pte-miR-2f-3p mature miRNA
• Sequence: 42 - UAUCACAGCCACAUUUGAUGCGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144