miRBase entry: pte-mir-34

Stem-loop pte-mir-34


Accession
MI0038055
Description
Parasteatoda tepidariorum pte-mir-34 precursor miRNA


Sequence

UGGCAGUGUGGUUAGCUGGUUGUguuuuuucuuucaacAACCACUAUCUUCUCUGCCCU
.(((((.(.((.(((.(((((((.............)))))))))).)).).)))))..

Structure
-U     U U  U   C       guuuu 
  GGCAG G GG UAG UGGUUGU     u
  ||||| | || ||| |||||||     u
  CCGUC C UC AUC ACCAAca     c
UC     U U  U   -       acuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Scf5bK3_269: 1846325-1846383 [+]

Database links

Mature pte-miR-34-5p

Accession MIMAT0046160
Description Parasteatoda tepidariorum pte-miR-34-5p mature miRNA
Sequence 1 - UGGCAGUGUGGUUAGCUGGUUGU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-34-3p

Accession MIMAT0046161
Description Parasteatoda tepidariorum pte-miR-34-3p mature miRNA
Sequence 39 - AACCACUAUCUUCUCUGCCCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144