miRBase entry: pte-mir-35c

Stem-loop pte-mir-35c


Accession
MI0038056
Description
Parasteatoda tepidariorum pte-mir-35c precursor miRNA


Sequence

CAAAAUUUUUCGCUGCGGUGGUUuagauuugaaaaUCACCGGGCGAAAAGUUUGCUU
..((((((((((((.(((((((((........)))))))))))))))))))))....

Structure
--CA            G         aga 
    AAAUUUUUCGCU CGGUGGUUu   u
    |||||||||||| |||||||||    
    UUUGAAAAGCGG GCCACUaaa   u
UUCG            -         agu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_786: 6403218-6403274 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from pte-mir-35c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35c-5p

Accession MIMAT0046162
Description Parasteatoda tepidariorum pte-miR-35c-5p mature miRNA
Sequence 1 - CAAAAUUUUUCGCUGCGGUGGUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35c-3p

Accession MIMAT0046163
Description Parasteatoda tepidariorum pte-miR-35c-3p mature miRNA
Sequence 36 - UCACCGGGCGAAAAGUUUGCUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144