miRBase entry: pte-mir-35e-1

Stem-loop pte-mir-35e-1


Accession
MI0038066
Description
Parasteatoda tepidariorum pte-mir-35e-1 precursor miRNA


Sequence

UCGAAUCUGUCACUUCGGUAAUUucaauucaauaaUCACCGGGUGAAAGAUUUGCUU
.(((((((.(((((.((((.(((..........))).))))))))).)))))))...

Structure
--U       G     U    A   ucaa 
   CGAAUCU UCACU CGGU AUU    u
   ||||||| ||||| |||| |||     
   GUUUAGA AGUGG GCCA Uaa    u
UUC       A     -    C   uaac 


Annotation confidence Not enough data
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Genome context
Scf5bK3_786: 6359147-6359203 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from pte-mir-35e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35e-5p

Accession MIMAT0046178
Description Parasteatoda tepidariorum pte-miR-35e-5p mature miRNA
Sequence 1 - UCGAAUCUGUCACUUCGGUAAUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35e-3p

Accession MIMAT0046179
Description Parasteatoda tepidariorum pte-miR-35e-3p mature miRNA
Sequence 36 - UCACCGGGUGAAAGAUUUGCUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144