miRBase entry: pte-mir-35h

Stem-loop pte-mir-35h


Accession
MI0038069
Description
Parasteatoda tepidariorum pte-mir-35h precursor miRNA


Sequence

CAAAAUUUUUCGUUGCGGUGGUUuacauuugauaaUCACCGGGUGAAAAAUUUGCUU
..(((((((((..(.((((((((..........)))))))).).)))))))))....

Structure
--CA         GU G        uaca 
    AAAUUUUUC  U CGGUGGUU    u
    |||||||||  | ||||||||     
    UUUAAAAAG  G GCCACUaa    u
UUCG         -U G        uagu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_786: 6403027-6403083 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from pte-mir-35h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35h-5p

Accession MIMAT0046184
Description Parasteatoda tepidariorum pte-miR-35h-5p mature miRNA
Sequence 1 - CAAAAUUUUUCGUUGCGGUGGUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35h-3p

Accession MIMAT0046185
Description Parasteatoda tepidariorum pte-miR-35h-3p mature miRNA
Sequence 36 - UCACCGGGUGAAAAAUUUGCUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144