miRBase entry: pte-mir-35m

Stem-loop pte-mir-35m


Accession
MI0038072
Description
Parasteatoda tepidariorum pte-mir-35m precursor miRNA


Sequence

AGCAAUCAAUGGCUCGGUGGCagugucuugccugACACCGGGUAGUUGAUUUGCUUU
((((((((((.((((((((.(((.((...))))).)))))))).))))).)))))..

Structure
--     -     G        G   u  c 
  AGCAA UCAAU GCUCGGUG Cag gu  
  ||||| ||||| |||||||| ||| || u
  UCGUU AGUUG UGGGCCAC guc cg  
UU     U     A        A   -  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Scf5bK3_73: 4580855-4580911 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-35m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35m-5p

Accession MIMAT0046190
Description Parasteatoda tepidariorum pte-miR-35m-5p mature miRNA
Sequence 1 - AGCAAUCAAUGGCUCGGUGGC - 21
Evidence experimental
Illumina [1]

Mature pte-miR-35m-3p

Accession MIMAT0046191
Description Parasteatoda tepidariorum pte-miR-35m-3p mature miRNA
Sequence 35 - ACACCGGGUAGUUGAUUUGCUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144