miRBase entry: pte-mir-35l

Stem-loop pte-mir-35l


Accession
MI0038078
Description
Parasteatoda tepidariorum pte-mir-35l precursor miRNA


Sequence

AGCAAUUAAUGGCUCGGUGGCagugccucgccugACACCGGGUCGUUUAUUUGCUUU
(((((..((((((((((((.(((.((...))))).))))))))))))...)))))..

Structure
--     -UU            G   u  c 
  AGCAA   AAUGGCUCGGUG Cag gc  
  |||||   |||||||||||| ||| || u
  UCGUU   UUGCUGGGCCAC guc cg  
UU     UAU            A   -  c 


Annotation confidence Not enough data
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Genome context
Scf5bK3_73: 4662657-4662713 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pte-mir-35l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35l-5p

Accession MIMAT0046200
Description Parasteatoda tepidariorum pte-miR-35l-5p mature miRNA
Sequence 1 - AGCAAUUAAUGGCUCGGUGGC - 21
Evidence experimental
Illumina [1]

Mature pte-miR-35l-3p

Accession MIMAT0046201
Description Parasteatoda tepidariorum pte-miR-35l-3p mature miRNA
Sequence 35 - ACACCGGGUCGUUUAUUUGCUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144