miRBase entry: pte-mir-35x

Stem-loop pte-mir-35x


Accession
MI0038079
Description
Parasteatoda tepidariorum pte-mir-35x precursor miRNA


Sequence

AGCAAUGAAUGGCUCGGUGGCAgugucucgccugACACCAGUUCGUUUAUUUGCUUU
((((((((((((((.((((.(((.((...))))).)))))).))))))).)))))..

Structure
--     -       -  C    G   u  c 
  AGCAA UGAAUGG CU GGUG CAg gu  
  ||||| ||||||| || |||| ||| || u
  UCGUU AUUUGCU GA CCAC guc cg  
UU     U       U  -    A   -  c 


Annotation confidence Not enough data
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Genome context
Scf5bK3_73: 4589896-4589952 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-35x
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35x-5p

Accession MIMAT0046202
Description Parasteatoda tepidariorum pte-miR-35x-5p mature miRNA
Sequence 1 - AGCAAUGAAUGGCUCGGUGGCA - 22
Evidence experimental
Illumina [1]

Mature pte-miR-35x-3p

Accession MIMAT0046203
Description Parasteatoda tepidariorum pte-miR-35x-3p mature miRNA
Sequence 35 - ACACCAGUUCGUUUAUUUGCUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144