miRBase entry: pte-mir-35q-2

Stem-loop pte-mir-35q-2


Accession
MI0038085
Description
Parasteatoda tepidariorum pte-mir-35q-2 precursor miRNA


Sequence

ACGAAAUAGUUUUAUCUGGUUACucaaaauuaaaauuguCACCGGAUGAACUAUUUUGGUU
.(((((((((((.(((((((.((..............)).))))))))))))))))))...

Structure
--A           U       U  ucaaaa 
   CGAAAUAGUUU AUCUGGU AC      u
   ||||||||||| ||||||| ||       
   GUUUUAUCAAG UAGGCCA ug      u
UUG           -       C  uuaaaa 


Annotation confidence Not enough data
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Genome context
Scf5bK3_9832: 27-87 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-35q-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35q-3p

Accession MIMAT0046167
Description Parasteatoda tepidariorum pte-miR-35q-3p mature miRNA
Sequence 40 - CACCGGAUGAACUAUUUUGGUU - 61
Evidence experimental
Illumina [1]

Mature pte-miR-35q-5p

Accession MIMAT0046210
Description Parasteatoda tepidariorum pte-miR-35q-5p mature miRNA
Sequence 1 - ACGAAAUAGUUUUAUCUGGUUAC - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144