miRBase entry: pte-mir-11947b-2

Stem-loop pte-mir-11947b-2


Accession
MI0038135
Description
Parasteatoda tepidariorum pte-mir-11947b-2 precursor miRNA


Sequence

ACAUUCCUAGCAUGUUGGUUAgcgucauagcuaaaUCAGCAUGGUAGGAAUGUAUUU
(((((((((.(((((((((((((......))).)))))))))).)))))))))....

Structure
----         G          -   gu 
    ACAUUCCUA CAUGUUGGUU Agc  c
    ||||||||| |||||||||| |||   
    UGUAAGGAU GUACGACUaa ucg  a
UUUA         G          a   au 


Annotation confidence Not enough data
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Genome context
Scf5bK3_44: 6393863-6393919 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-11947b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-11947b-5p

Accession MIMAT0046296
Description Parasteatoda tepidariorum pte-miR-11947b-5p mature miRNA
Sequence 1 - ACAUUCCUAGCAUGUUGGUUA - 21
Evidence experimental
Illumina [1]

Mature pte-miR-11947b-3p

Accession MIMAT0046297
Description Parasteatoda tepidariorum pte-miR-11947b-3p mature miRNA
Sequence 36 - UCAGCAUGGUAGGAAUGUAUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144