miRBase entry: pte-mir-11961a

Stem-loop pte-mir-11961a


Accession
MI0038141
Description
Parasteatoda tepidariorum pte-mir-11961a precursor miRNA

Literature search
0 open access papers mention pte-mir-11961a
(0 sentences)

Sequence

GGUCAGUAUCUGCUGUGAUACGgguggcgcaguuauucgUAUCACAAUAGUGCUAGACAUU
.(((((((.(((.(((((((((((((((...))))))))))))))).))))))).)))...

Structure
--G   -    U   C               g 
   GUC AGUA CUG UGUGAUACGgguggc  
   ||| |||| ||| ||||||||||||||| c
   CAG UCGU GAU ACACUAUgcuuauug  
UUA   A    -   A               a 


Annotation confidence Not enough data
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Genome context
Scf5bK3_2297: 44299-44359 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pte-mir-11961a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-11961a-5p

Accession MIMAT0046306
Description Parasteatoda tepidariorum pte-miR-11961a-5p mature miRNA
Sequence 1 - GGUCAGUAUCUGCUGUGAUACG - 22
Evidence experimental
Illumina [1]

Mature pte-miR-11961a-3p

Accession MIMAT0046307
Description Parasteatoda tepidariorum pte-miR-11961a-3p mature miRNA
Sequence 40 - UAUCACAAUAGUGCUAGACAUU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144