miRBase entry: pte-mir-11961c

Stem-loop pte-mir-11961c


Accession
MI0038143
Description
Parasteatoda tepidariorum pte-mir-11961c precursor miRNA

Literature search
0 open access papers mention pte-mir-11961c
(0 sentences)

Sequence

GGUCGGUUUCUGCUGUGAGACGgcggucgcugucguccgUAUCACAGCAGAAUUUGACAUUU
.(((((.(((((((((((((((((((...))))))))....))))))))))).)))))....

Structure
---G     U           ----        u 
    GUCGG UUCUGCUGUGA    GACGgcgg  
    ||||| |||||||||||    |||||||| c
    CAGUU AAGACGACACU    cugcuguc  
UUUA     U           AUgc        g 


Annotation confidence Not enough data
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Genome context
Scf5bK3_2297: 45051-45112 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pte-mir-11961c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-11961c-5p

Accession MIMAT0046310
Description Parasteatoda tepidariorum pte-miR-11961c-5p mature miRNA
Sequence 1 - GGUCGGUUUCUGCUGUGAGACG - 22
Evidence experimental
Illumina [1]

Mature pte-miR-11961c-3p

Accession MIMAT0046311
Description Parasteatoda tepidariorum pte-miR-11961c-3p mature miRNA
Sequence 40 - UAUCACAGCAGAAUUUGACAUUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144