miRBase entry: zma-MIR11969

Stem-loop zma-MIR11969


Accession
MI0038157
Description
Zea mays zma-MIR11969 precursor miRNA


Sequence

7 reads, 284 reads per million, 4 experiments
cguuaguggaaaucagaauuagugauuaaaaaacaagggguaaaaugauaauuGCAAGGUCAGAGAAGGAUAUAAUCacaauuaauuuucaggguuaauugugaUUAUACCCAUCUCUCACCUUGCAAuugugauuuuaccccucguuuuauuuuauuuuauucacgaauucugauuuucacuaacg
((((((((((((((((((((.((((.((((((((.(((((((((((.(((((((((((((.(((((.((.((((((((((((((((((...)))))))))))))))))).)).))))).))))))))))))).))))))))))).)))........))))).)))).))))))))))))))))))))

Structure
                    a    u     --------   a           g             C     A  A                  u 
cguuaguggaaaucagaauu guga uaaaa        aac agggguaaaau auaauuGCAAGGU AGAGA GG UAUAAUCacaauuaauuu  
|||||||||||||||||||| |||| |||||        ||| ||||||||||| ||||||||||||| ||||| || |||||||||||||||||| c
gcaaucacuuuuagucuuaa cacu auuuu        uug uccccauuuua uguuAACGUUCCA UCUCU CC AUAUUaguguuaauuggg  
                    g    u     auuuuauu   c           g             C     A  C                  a 


Annotation confidence Not enough data
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Genome context
chr2: 201270471-201270657 [+]

Database links

Mature zma-miR11969-5p

Accession MIMAT0046332
Description Zea mays zma-miR11969-5p mature miRNA
Sequence 54 - GCAAGGUCAGAGAAGGAUAUAAUC - 77
Evidence experimental
Illumina [1]

Mature zma-miR11969-3p

Accession MIMAT0046333
Description Zea mays zma-miR11969-3p mature miRNA
Sequence 105 - UUAUACCCAUCUCUCACCUUGCAA - 128
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27313591
    Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis
    Dukowic-Schulze S, Sundararajan A, Ramaraj T, Kianian S, Pawlowski WP, Mudge J, Chen C
    Front Plant Sci (2016) 7:762