miRBase entry: zma-MIR11970

Stem-loop zma-MIR11970


Accession
MI0038158
Description
Zea mays zma-MIR11970 precursor miRNA

Literature search
1 open access papers mention zma-MIR11970
(1 sentences)

Sequence

133 reads, 2949 reads per million, 8 experiments
agacaccgauggcuaugcaagcagugguucugugCAAGCGUGCAAGCAAACCAUUugauccauuagauuacgauucaaccacagauacaaccaugguuuguuaggagcuauuuuauaaagauuauugagcuagugguggaagaguuuaaguguuaaaugugauuuacgguuggaucacgaucuaauggauuagaUGGUUUGGUUGCACGUUUGCAcaaaaggacugcuugcauagcggucguugccu
...((.((((.((((((((((((((.....(((((((((((((((.(((((((((((((((((((((((..(((((((((..(((((((...(((((((.....)))))))........(((..(((((((..(.....)..)))))))..)))...))).))))..)))))))))..))))))))))))))))))))))).))))))))))))))).....)))))))))))))).)))).))...

Structure
aga  c    g              gguuc               G                       ac         ac    -   accaugguuuguuaggagcuauuuuauaaa   ua       ag g 
   ca cgau gcuaugcaagcagu     ugugCAAGCGUGCAA CAAACCAUUugauccauuagauu  gauucaacc  agau aca                              gau  uugagcu  u g
   || |||| ||||||||||||||     ||||||||||||||| |||||||||||||||||||||||  |||||||||  |||| |||                              |||  |||||||  | u
   gu gcug cgauacguucguca     acACGUUUGCACGUU GUUUGGUagauuagguaaucuag  cuagguugg  uuua ugu                              uug  aauuuga  a g
ucc  u    g              ggaaa               G                       ca         ca    g   ---------------------------aaa   ug       ga g 


Annotation confidence Low
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Genome context
chr3: 208954641-208954887 [-]

Database links

Mature zma-miR11970-5p

Accession MIMAT0046334
Description Zea mays zma-miR11970-5p mature miRNA
Sequence 35 - CAAGCGUGCAAGCAAACCAUU - 55
Evidence experimental
Illumina [1]

Mature zma-miR11970-3p

Accession MIMAT0046335
Description Zea mays zma-miR11970-3p mature miRNA
Sequence 195 - UGGUUUGGUUGCACGUUUGCA - 215
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27313591
    Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis
    Dukowic-Schulze S, Sundararajan A, Ramaraj T, Kianian S, Pawlowski WP, Mudge J, Chen C
    Front Plant Sci (2016) 7:762