Stem-loop sequence bta-mir-2285av

Accession

MI0038170 (change log)

Description

Bos taurus miR-2285av stem-loop

Literature search

11 open access papers mention bta-mir-2285av
(15 sentences)

Stem-loop

   --aaa        c         guuuac 
5'      aguucguu ggguuuuuu      a
        |||||||| |||||||||      g
3'      ucaaguaa cccaaaaag      c
   guuuc        a         aucacu 

Deep sequencing

6693 reads, 22.2 reads per million, 72 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 16589918-16589976 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-2285av

• bta-mir-2285o-1: chr12: 16589906-16589987 [-]
• bta-mir-2285av: chr12: 16589918-16589976 [+]

Database links

• miRBase Tracker:MI0038170

Mature sequence bta-miR-2285av

• Accession: MIMAT0046347
• Sequence: 1 - aaaaguucguucggguuuuu - 20
• Deep sequencing: 6628 reads, 72 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:27100870 "Comparative Analysis of the miRNome of Bovine Milk Fat, Whey and Cells" Li R, Dudemaine PL, Zhao X, Lei C, Ibeagha-Awemu EM PLoS One. 11:e0154129(2016).