miRBase entry: xla-let-7c

Stem-loop xla-let-7c


Accession
MI0038221
Description
Xenopus laevis xla-let-7c precursor miRNA

Literature search
2 open access papers mention xla-let-7c
(2 sentences)

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaaugacacccugggaguuaaCUGUACAACCUUCUAGCUUUCC
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure
--U   G   U             uag   ga ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   UUC AUC UCCAACAUGUCaa   uug  g  c
CCU   G   U             ---   ag gu 


Annotation confidence Not enough data
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Genome context
chr2S: 9125193-9125259 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-let-7c-5p

Accession MIMAT0046399
Description Xenopus laevis xla-let-7c-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence experimental
Illumina [1]

Mature xla-let-7c-3p

Accession MIMAT0046400
Description Xenopus laevis xla-let-7c-3p mature miRNA
Sequence 46 - CUGUACAACCUUCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38