miRBase entry: xla-let-7e

Stem-loop xla-let-7e


Accession
MI0038222
Description
Xenopus laevis xla-let-7e precursor miRNA

Literature search
2 open access papers mention xla-let-7e
(2 sentences)

Sequence

UGAGGUAGUAGGUUGUUUAGUUguggguugcaccccgacauuuggagaaCUAUACAAUCUACUGUCUUUCC
.(((((((((((((((.(((((.(((((...))))..........).))))).)))))))))))))))...

Structure
--U               U     g ----------    u 
   GAGGUAGUAGGUUGU UAGUU u          gggu  
   ||||||||||||||| ||||| |          |||| g
   UUCUGUCAUCUAACA AUCaa a          ccca  
CCU               U     g gguuuacagc    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Sc000231_chrNA: 497-567 [-]

Database links

Mature xla-let-7e-5p

Accession MIMAT0046401
Description Xenopus laevis xla-let-7e-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUUUAGUU - 22
Evidence experimental
Illumina [1]

Mature xla-let-7e-3p

Accession MIMAT0046402
Description Xenopus laevis xla-let-7e-3p mature miRNA
Sequence 50 - CUAUACAAUCUACUGUCUUUCC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38