miRBase entry: xla-mir-10a

Stem-loop xla-mir-10a


Accession
MI0038233
Description
Xenopus laevis xla-mir-10a precursor miRNA

Literature search
1 open access papers mention xla-mir-10a
(2 sentences)

Sequence

UACCCUGUAGAUCCGAAUUUGUGUgagcgcaaucauaucACAAAUUCGUGUCUGGGGGGAUA
..((((.(((((.(((((((((((((......)))...)))))))))).))))).))))...

Structure
-UA    G     C          ---   gc 
   CCCU UAGAU CGAAUUUGUG   Uga  g
   |||| ||||| ||||||||||   |||   
   GGGG GUCUG GCUUAAACAc   acu  c
AUA    G     U          uau   aa 


Annotation confidence Not enough data
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Genome context
chr9_10L: 3499313-3499374 [-]

Database links

Mature xla-miR-10a-5p

Accession MIMAT0046422
Description Xenopus laevis xla-miR-10a-5p mature miRNA
Sequence 1 - UACCCUGUAGAUCCGAAUUUGUGU - 24
Evidence experimental
Illumina [1]

Mature xla-miR-10a-3p

Accession MIMAT0046423
Description Xenopus laevis xla-miR-10a-3p mature miRNA
Sequence 40 - ACAAAUUCGUGUCUGGGGGGAUA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38