miRBase entry: xla-mir-130c-1

Stem-loop xla-mir-130c-1


Accession
MI0038246
Description
Xenopus laevis xla-mir-130c-1 precursor miRNA


Sequence

GCCCUUUUUCUGUUGUACUACUggaauuuguaauuagCAGUGCAAUAUUAAAAGGGCAU
((((((((..(((((((((.(((...........))).)))))))))..))))))))..

Structure
--        UC         A   gaau 
  GCCCUUUU  UGUUGUACU CUg    u
  ||||||||  ||||||||| |||    u
  CGGGAAAA  AUAACGUGA gau    g
UA        UU         C   uaau 


Annotation confidence Not enough data
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Genome context
chr1S: 133547822-133547880 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-130c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-130c-5p

Accession MIMAT0046445
Description Xenopus laevis xla-miR-130c-5p mature miRNA
Sequence 1 - GCCCUUUUUCUGUUGUACUACU - 22
Evidence experimental
Illumina [1]

Mature xla-miR-130c-3p

Accession MIMAT0046446
Description Xenopus laevis xla-miR-130c-3p mature miRNA
Sequence 38 - CAGUGCAAUAUUAAAAGGGCAU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38