miRBase entry: xla-mir-17-2

Stem-loop xla-mir-17-2


Accession
MI0038268
Description
Xenopus laevis xla-mir-17-2 precursor miRNA

Literature search
2 open access papers mention xla-mir-17-2
(5 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAGUgauuuaacagaaccuaCUGCAGUGAAGGCACUUGUAGC
..((((((((.((.(((((.(((.(.(((....)))))))))))).)).)))))))).....

Structure
---CA        A  G     G   U a   a 
     AAGUGCUU CA UGCAG UAG g uuu a
     |||||||| || ||||| ||| | |||  
     UUCACGGA GU ACGUC auc c aag c
CGAUG        A  G     -   - -   a 


Annotation confidence Not enough data
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Genome context
chr2L: 107332477-107332538 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from xla-mir-17-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-17-5p

Accession MIMAT0046482
Description Xenopus laevis xla-miR-17-5p mature miRNA
Sequence 1 - CAAAGUGCUUACAGUGCAGGUAGU - 24
Evidence experimental
Illumina [1]

Mature xla-miR-17-2-3p

Accession MIMAT0046484
Description Xenopus laevis xla-miR-17-2-3p mature miRNA
Sequence 41 - CUGCAGUGAAGGCACUUGUAGC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38