miRBase entry: xla-mir-182-1

Stem-loop xla-mir-182-1


Accession
MI0038272
Description
Xenopus laevis xla-mir-182-1 precursor miRNA

Literature search
1 open access papers mention xla-mir-182-1
(129 sentences)

Sequence

UUUGGCAAUGGUAGAACUCACACuggugagcuauguagauccgGUGGUUCUAGACUUGCCAACUa
.(((((((...((((((...((((((....((....))..))))))))))))...)))))))...

Structure
--U       UGG      UCA      ugag  a 
   UUGGCAA   UAGAAC   CACugg    cu u
   |||||||   ||||||   ||||||    ||  
   AACCGUU   AUCUUG   GUGgcc    ga g
aUC       CAG      ---      --ua  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3S: 59897286-59897350 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from xla-mir-182-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-182-5p

Accession MIMAT0046490
Description Xenopus laevis xla-miR-182-5p mature miRNA
Sequence 1 - UUUGGCAAUGGUAGAACUCACAC - 23
Evidence experimental
Illumina [1]

Mature xla-miR-182-3p

Accession MIMAT0046491
Description Xenopus laevis xla-miR-182-3p mature miRNA
Sequence 44 - GUGGUUCUAGACUUGCCAACU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38