miRBase entry: xla-mir-194-2

Stem-loop xla-mir-194-2


Accession
MI0038282
Description
Xenopus laevis xla-mir-194-2 precursor miRNA


Sequence

UGUAACAGCAACUCCAUGUGGAAguagauauaauauuCCGGUGGAGAUGCUGUUAUCUG
.(((((((((.((((((.(((((............))))))))))).)))))))))...

Structure
--U         A      G     guaga 
   GUAACAGCA CUCCAU UGGAA     u
   ||||||||| |||||| |||||      
   UAUUGUCGU GAGGUG GCCuu     a
GUC         A      -     auaau 


Annotation confidence Not enough data
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Genome context
chr4L: 21825288-21825346 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-194-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-194-5p

Accession MIMAT0046508
Description Xenopus laevis xla-miR-194-5p mature miRNA
Sequence 1 - UGUAACAGCAACUCCAUGUGGAA - 23
Evidence experimental
Illumina [1]

Mature xla-miR-194-3p

Accession MIMAT0046509
Description Xenopus laevis xla-miR-194-3p mature miRNA
Sequence 38 - CCGGUGGAGAUGCUGUUAUCUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38