miRBase entry: xla-mir-199

Stem-loop xla-mir-199

Accession

MI0038283

Description

Xenopus laevis xla-mir-199 precursor miRNA

Sequence

CCCAGUGUUCAGACUACCUGUUCAggacaaugcuguuguACAGUAGUCUGCACAUUGGUUAG
.(((((((.((((((((.(((....((((....))))..))))))))))).)))))))....

Structure

---C       U        C   UCAg    a 
    CCAGUGU CAGACUAC UGU    gaca u
    ||||||| |||||||| |||    ||||  
    GGUUACA GUCUGAUG ACA    uugu g
GAUU       C        -   --ug    c

Annotation confidence Not enough data

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Genome context

chr4S: 70698475-70698536 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-199

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-199-5p

Accession	MIMAT0046510
Description	Xenopus laevis xla-miR-199-5p mature miRNA
Sequence	1 - CCCAGUGUUCAGACUACCUGUUCA - 24
Evidence	experimental Illumina [1]

Mature xla-miR-199-3p

Accession	MIMAT0046511
Description	Xenopus laevis xla-miR-199-3p mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUUAG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38