miRBase entry: xla-mir-19b-2

Stem-loop xla-mir-19b-2


Accession
MI0038285
Description
Xenopus laevis xla-mir-19b-2 precursor miRNA


Sequence

AGUUUUGCAGGUUUGCAUCCAGCUuuucucuggcuugcUGUGCAAAUCCAUGCAAAACUGAU
(((((((((((((((((..((((.............)))))))))).)).)))))))))...

Structure
---         -  -      UC    Uuuuc 
   AGUUUUGCA GG UUUGCA  CAGC     u
   ||||||||| || ||||||  ||||     c
   UCAAAACGU CC AAACGU  GUcg     u
UAG         A  U      --    uucgg 


Annotation confidence Not enough data
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Genome context
chr2S: 91488415-91488476 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from xla-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-19b-5p

Accession MIMAT0046514
Description Xenopus laevis xla-miR-19b-5p mature miRNA
Sequence 1 - AGUUUUGCAGGUUUGCAUCCAGCU - 24
Evidence experimental
Illumina [1]

Mature xla-miR-19b-3p

Accession MIMAT0046515
Description Xenopus laevis xla-miR-19b-3p mature miRNA
Sequence 39 - UGUGCAAAUCCAUGCAAAACUGAU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38