miRBase entry: xla-mir-221

Stem-loop xla-mir-221


Accession
MI0038301
Description
Xenopus laevis xla-mir-221 precursor miRNA

Literature search
1 open access papers mention xla-mir-221
(5 sentences)

Sequence

ACCUGGCAUACAAUGUAGAAAACUGUguuuguaaaucaacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((............))))))))))))).))))))))..

Structure
--        U         AAAA    guuug 
  ACCUGGCA ACAAUGUAG    CUGU     u
  |||||||| |||||||||    ||||      
  UGGGUCGU UGUUACAUC    GAca     a
UU        C         ----    acuaa 


Annotation confidence Not enough data
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Genome context
chr2S: 44258709-44258770 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-221-5p

Accession MIMAT0046542
Description Xenopus laevis xla-miR-221-5p mature miRNA
Sequence 1 - ACCUGGCAUACAAUGUAGAAAACUGU - 26
Evidence experimental
Illumina [1]

Mature xla-miR-221-3p

Accession MIMAT0046543
Description Xenopus laevis xla-miR-221-3p mature miRNA
Sequence 41 - AGCUACAUUGUCUGCUGGGUUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38