miRBase entry: xla-mir-338

Stem-loop xla-mir-338


Accession
MI0038322
Description
Xenopus laevis xla-mir-338 precursor miRNA

Literature search
2 open access papers mention xla-mir-338
(15 sentences)

Sequence

AACAAUAUCCUGAUGCCGUCUGAGUGugcgggaaagcUCCAGCAUCAGUGAUUUUGUUGG
(((((.((((((((((.(...((((..........))))).))))))).))).)))))..

Structure
--     U   -       C UCU    Gugc 
  AACAA AUC CUGAUGC G   GAGU    g
  ||||| ||| ||||||| |   ||||     
  UUGUU UAG GACUACG C   CUcg    g
GG     U   U       A ---    aaag 


Annotation confidence Not enough data
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Genome context
chr9_10S: 91668157-91668216 [-]

Database links

Mature xla-miR-338-5p

Accession MIMAT0046578
Description Xenopus laevis xla-miR-338-5p mature miRNA
Sequence 1 - AACAAUAUCCUGAUGCCGUCUGAGUG - 26
Evidence experimental
Illumina [1]

Mature xla-miR-338-3p

Accession MIMAT0046579
Description Xenopus laevis xla-miR-338-3p mature miRNA
Sequence 38 - UCCAGCAUCAGUGAUUUUGUUGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38