miRBase entry: xla-mir-99

Stem-loop xla-mir-99


Accession
MI0038344
Description
Xenopus laevis xla-mir-99 precursor miRNA


Sequence

AACCCGUAGAUCCGAUCUUGUggugaauuccuuugcucAAGCUCGUUUCUAUGGGUCUG
.(((((((((..(((.((((.((((((....)))))))))).)))..)))))))))...

Structure
--A         UC   U    U      u 
   ACCCGUAGA  CGA CUUG ggugaa u
   |||||||||  ||| |||| ||||||  
   UGGGUAUCU  GCU GAAc ucguuu c
GUC         UU   C    -      c 


Annotation confidence Not enough data
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Genome context
chr2S: 9125857-9125915 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from xla-mir-99
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xla-miR-99-5p

Accession MIMAT0046619
Description Xenopus laevis xla-miR-99-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAUCUUGU - 21
Evidence experimental
Illumina [1]

Mature xla-miR-99-3p

Accession MIMAT0046620
Description Xenopus laevis xla-miR-99-3p mature miRNA
Sequence 39 - AAGCUCGUUUCUAUGGGUCUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26548531
    Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
    "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
    "Dev Biol (2016) 409:26-38