Stem-loop sequence bta-mir-148d

Accession

MI0038395 (change log)

Description

Bos taurus miR-148d stem-loop

Literature search

16 open access papers mention bta-mir-148d
(27 sentences)

Stem-loop

   ---         ua ug a       cu uc 
5'    aaaguucug  g  c cugacuu  a  a
      |||||||||  |  | |||||||  |   
3'    uuucaagac  u  g ggcugag  u  u
   ccg         uc gu a       ac ua 

Deep sequencing

2 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr4: 70663559-70663619 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-148d

• bta-mir-148d: chr4: 70663559-70663619 [-]
• bta-mir-148a: chr4: 70663557-70663624 [+]

Database links

• miRBase Tracker:MI0038395

Mature sequence bta-miR-148d

• Accession: MIMAT0046670
• Sequence: 1 - aaaguucuguagugcacugacu - 22
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).