Stem-loop sequence bta-mir-2285ch

Accession

MI0038396 (change log)

Description

Bos taurus miR-2285ch stem-loop

Literature search

11 open access papers mention bta-mir-2285ch
(15 sentences)

Stem-loop

   --                 u  gc     uau 
5'   uggccaaaaaguucguu ga  uuucu   a
     ||||||||||||||||| ||  |||||    
3'   accgguuuuucaaguaa cu  aaagg   c
   cg                 -  -a     uac 

Deep sequencing

532 reads, 0 reads per million, 52 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr1: 123739555-123739616 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038396

Mature sequence bta-miR-2285ch

• Accession: MIMAT0046671
• Sequence: 41 - aucaaugaacuuuuuggccagc - 62
• Deep sequencing: 65 reads, 40 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).