Stem-loop sequence bta-mir-2285ck

Accession

MI0038401 (change log)

Description

Bos taurus miR-2285ck stem-loop

Literature search

11 open access papers mention bta-mir-2285ck
(15 sentences)

Stem-loop

   --         uc       c   -   uc    a 
5'   uggccaaaa  uuuguuu agu uuu  caua c
     |||||||||  ||||||| ||| |||  ||||  
3'   accgguuuu  aaacaag uca aaa  guau a
   ca         uc       c   c   cc    g 

Deep sequencing

171 reads, 0 reads per million, 57 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 45922350-45922418 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038401

Mature sequence bta-miR-2285ck

• Accession: MIMAT0046676
• Sequence: 1 - uggccaaaaucuuuguuucagu - 22
• Deep sequencing: 4 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).