Stem-loop sequence bta-mir-2285cm

Accession

MI0038407 (change log)

Description

Bos taurus miR-2285cm stem-loop

Literature search

11 open access papers mention bta-mir-2285cm
(15 sentences)

Stem-loop

   --             ug        c   a 
5'   uaaaaaguuuguu  gguuuuuc aua c
     |||||||||||||  |||||||| ||| a
3'   guuuuucaaacaa  ccaaaaag uau g
   ag             gu        a   c 

Deep sequencing

16436 reads, 66.7 reads per million, 75 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr1: 34131583-34131643 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038407

Mature sequence bta-miR-2285cm

• Accession: MIMAT0046682
• Sequence: 39 - aaaaccugaacaaacuuuuugga - 61
• Deep sequencing: 4922 reads, 73 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:26519053 "Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil" Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM BMC Genomics. 16:884(2015).