miRBase entry: mco-mir-4989

Stem-loop mco-mir-4989

Accession

MI0038533

Description

Mesocestoides corti mco-mir-4989 precursor miRNA

Sequence

UGGGUAGUCGUUGCAUUUCCAccuugcugcaauuccguagccaguuuacagugaaaaugcaccaacuaucugaga
.(((((((.(.(((((((.(((((.(((((......))))).))......))).))))))).).)))))))....

Structure

---U       C U       C   ------  u     aa 
    GGGUAGU G UGCAUUU CAc      cu gcugc  u
    ||||||| | ||||||| |||      || |||||   
    ucuauca c acguaaa gug      ga cgaug  u
agag       a c       a   acauuu  c     cc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

LM530945.1: 17808-17882 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mco-mir-4989

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mco-miR-4989-3p

Accession	MIMAT0046809
Description	Mesocestoides corti mco-miR-4989-3p mature miRNA
Sequence	1 - UGGGUAGUCGUUGCAUUUCCA - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 27544036
Identification and profiling of microRNAs in two developmental stages of the model cestode parasite Mesocestoides corti
"Basika T, Macchiaroli N, Cucher M, Espinola S, Kamenetzky L, Zaha A, Rosenzvit M, Ferreira HB"
"Mol Biochem Parasitol (2016) 210:37-49