miRBase entry: cpo-let-7d

Stem-loop cpo-let-7d


Accession
MI0038545
Description
Cavia porcellus cpo-let-7d precursor miRNA


Sequence

AGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCU
.((((((((((((((.((((((...((((((.....))))))..........)))))).))))))))))))))...

Structure
--A              C      -------uua      g 
   GAGGUAGUAGGUUG AUAGUU          gggcag g
   |||||||||||||| ||||||          |||||| a
   UUCCGUCGUCCAGC UAUCaa          cccguu u
UCU              A      uggaggaaca      u 


Annotation confidence Not enough data
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Genome context
DS562897.1: 104190-104265 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-let-7d-5p

Accession MIMAT0046824
Description Cavia porcellus cpo-let-7d-5p mature miRNA
Sequence 1 - AGAGGUAGUAGGUUGCAUAGUU - 22
Evidence experimental
Illumina [1]

Mature cpo-let-7d-3p

Accession MIMAT0046825
Description Cavia porcellus cpo-let-7d-3p mature miRNA
Sequence 55 - CUAUACGACCUGCUGCCUUUCU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344