miRBase entry: cpo-mir-1a

Stem-loop cpo-mir-1a


Accession
MI0038552
Description
Cavia porcellus cpo-mir-1a precursor miRNA


Sequence

ACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((..(........)..))))).))))))))))))))))..

Structure
--                AC     ug aca 
  ACAUACUUCUUUAUGU  CCAUA  a   u
  ||||||||||||||||  |||||  |    
  UGUAUGAAGAAAUGUA  GGUau  u   a
UA                -A     cg aac 


Annotation confidence Not enough data
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Genome context
DS562869.1: 40571811-40571871 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-1a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-1a-5p

Accession MIMAT0046837
Description Cavia porcellus cpo-miR-1a-5p mature miRNA
Sequence 1 - ACAUACUUCUUUAUGUACCCAUA - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-1a-3p

Accession MIMAT0046838
Description Cavia porcellus cpo-miR-1a-3p mature miRNA
Sequence 40 - UGGAAUGUAAAGAAGUAUGUAU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344