Stem-loop cpo-mir-18a

Accession

MI0038566

Description

Cavia porcellus cpo-mir-18a precursor miRNA

Sequence

UAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGGC
.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))).....

Structure

----U    U    C   U    A   -  aa u 
     AAGG GCAU UAG GCAG UAG ug  g a
     |||| |||| ||| |||| ||| ||  | g
     UUCC CGUG AUC CGUC Auc ac  u a
CGGUC    U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

DS562860.1: 32029271-32029335 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-18a

Mature cpo-miR-18a-5p

• Accession: MIMAT0046859
• Description: Cavia porcellus cpo-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-18a-3p

• Accession: MIMAT0046860
• Description: Cavia porcellus cpo-miR-18a-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCUCCUUCUGGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344