miRBase entry: cpo-mir-20a

Stem-loop cpo-mir-20a


Accession
MI0038571
Description
Cavia porcellus cpo-mir-20a precursor miRNA


Sequence

guagcacUAAAGUGCUUAUAGUGCAGGUAGuguucaguuaucuACUGCAUUAUGAGCACUUAAAGUacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure
    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    c
|||| |||  ||||||||||||||||| |||    a
cguc UGA  UUCACGAGUAUUACGUC Auc    g
    a   AA                 -   uauu 


Annotation confidence Not enough data
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Genome context
DS562860.1: 32028964-32029034 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpo-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-20a-5p

Accession MIMAT0046868
Description Cavia porcellus cpo-miR-20a-5p mature miRNA
Sequence 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
Evidence experimental
Illumina [1]

Mature cpo-miR-20a-3p

Accession MIMAT0046869
Description Cavia porcellus cpo-miR-20a-3p mature miRNA
Sequence 44 - ACUGCAUUAUGAGCACUUAAAGU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344