miRBase entry: cpo-mir-27b

Stem-loop cpo-mir-27b


Accession
MI0038584
Description
Cavia porcellus cpo-mir-27b precursor miRNA

Literature search
1 open access papers mention cpo-mir-27b
(3 sentences)

Sequence

AGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))..

Structure
--           G    G       ugau   u 
  AGAGCUUAGCU AUUG UGAACAg    ugg  
  ||||||||||| |||| |||||||    ||| u
  UCUUGAAUCGG UGAC ACUUguu    gcc  
CG           -    -       --uc   u 


Annotation confidence Not enough data
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Genome context
DS562897.1: 4055574-4055636 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-27b-5p

Accession MIMAT0046892
Description Cavia porcellus cpo-miR-27b-5p mature miRNA
Sequence 1 - AGAGCUUAGCUGAUUGGUGAACA - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-27b-3p

Accession MIMAT0046893
Description Cavia porcellus cpo-miR-27b-3p mature miRNA
Sequence 43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344