miRBase entry: cpo-mir-138-2

Stem-loop cpo-mir-138-2


Accession
MI0038645
Description
Cavia porcellus cpo-mir-138-2 precursor miRNA


Sequence

AGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccgGCUAUUUCACGACACCAGGGU
..(((((((((((((...(((((..(((.((......)))))...)))))..)))))))))))))...

Structure
-AG             UCA     -ac   c  cg 
   CUGGUGUUGUGAA   GGCCG   gag ag  c
   |||||||||||||   |||||   ||| ||   
   GACCACAGCACUU   UCGgc   uuc uc  a
UGG             -UA     cca   -  cu 


Annotation confidence Not enough data
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Genome context
DS562877.1: 25185275-25185342 [-]

Database links

Mature cpo-miR-138-5p

Accession MIMAT0046999
Description Cavia porcellus cpo-miR-138-5p mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-138-2-3p

Accession MIMAT0047001
Description Cavia porcellus cpo-miR-138-2-3p mature miRNA
Sequence 48 - GCUAUUUCACGACACCAGGGU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344