miRBase entry: cpo-mir-181b-1

Stem-loop cpo-mir-181b-1

Accession

MI0038667

Description

Cavia porcellus cpo-mir-181b-1 precursor miRNA

Sequence

AACAUUCAUUGCUGUCGGUGGGUUgaauuguguggacaagCUCACUGGACAAUGAAUGCAA
..(((((((((...(((((((((....((((....))))))))))))).)))))))))...

Structure

-AA         CUG         Ugaa    g 
   CAUUCAUUG   UCGGUGGGU    uugu u
   |||||||||   |||||||||    ||||  
   GUAAGUAAC   GGUCACUCg    aaca g
AAC         --A         ----    g

Annotation confidence Not enough data

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Genome context

DS562867.1: 23445282-23445342 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-181b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-181b-5p

Accession	MIMAT0047043
Description	Cavia porcellus cpo-miR-181b-5p mature miRNA
Sequence	1 - AACAUUCAUUGCUGUCGGUGGGUU - 24
Evidence	experimental Illumina [1]

Mature cpo-miR-181b-3p

Accession	MIMAT0047044
Description	Cavia porcellus cpo-miR-181b-3p mature miRNA
Sequence	41 - CUCACUGGACAAUGAAUGCAA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344