miRBase entry: cpo-mir-200a

Stem-loop cpo-mir-200a


Accession
MI0038692
Description
Cavia porcellus cpo-mir-200a precursor miRNA


Sequence

CAUCUUACCGGACAGUGCUGGAuuucuuggcuugacucUAACACUGUCUGGUAACGAUGUU
(((((((((((((((((.((((..((.......)).)))).))))))))))))).))))..

Structure
--    -             C    uu  uu 
  CAUC UUACCGGACAGUG UGGA  uc  g
  |||| ||||||||||||| ||||  ||  g
  GUAG AAUGGUCUGUCAC AUcu  ag  c
UU    C             A    -c  uu 


Annotation confidence Not enough data
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Genome context
DS563041.1: 1149699-1149759 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-200a-5p

Accession MIMAT0047089
Description Cavia porcellus cpo-miR-200a-5p mature miRNA
Sequence 1 - CAUCUUACCGGACAGUGCUGGA - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-200a-3p

Accession MIMAT0047090
Description Cavia porcellus cpo-miR-200a-3p mature miRNA
Sequence 39 - UAACACUGUCUGGUAACGAUGUU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344