miRBase entry: cpo-mir-221

Stem-loop cpo-mir-221


Accession
MI0038713
Description
Cavia porcellus cpo-mir-221 precursor miRNA


Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuguugaacaacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))...

Structure
---        U         AUUU    -    g 
   ACCUGGCA ACAAUGUAG    CUGU guuu  
   |||||||| |||||||||    |||| |||| u
   UGGGUCGU UGUUACAUC    GAca caag  
CUU        C         ----    a    u 


Annotation confidence Not enough data
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Genome context
DS562888.1: 12035274-12035336 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-221-5p

Accession MIMAT0047130
Description Cavia porcellus cpo-miR-221-5p mature miRNA
Sequence 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
Evidence experimental
Illumina [1]

Mature cpo-miR-221-3p

Accession MIMAT0047131
Description Cavia porcellus cpo-miR-221-3p mature miRNA
Sequence 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344