miRBase entry: cpo-mir-302c

Stem-loop cpo-mir-302c


Accession
MI0038723
Description
Cavia porcellus cpo-mir-302c precursor miRNA


Sequence

GCUUUAACAUGGGGGUACCUGCUgugcaaaggaaagUAAGUGCUUCCAUGUUUGAGUGG
((((.(((((((((((((.((((...........)))).))))))))))))).))))..

Structure
--    U             C    gugc 
  GCUU AACAUGGGGGUAC UGCU    a
  |||| ||||||||||||| ||||    a
  UGAG UUGUACCUUCGUG AUga    a
GG    U             A    aagg 


Annotation confidence Not enough data
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Genome context
DS562898.1: 11472099-11472157 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cpo-mir-302c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-302c-5p

Accession MIMAT0047150
Description Cavia porcellus cpo-miR-302c-5p mature miRNA
Sequence 1 - GCUUUAACAUGGGGGUACCUGCU - 23
Evidence not_experimental

Mature cpo-miR-302c-3p

Accession MIMAT0047151
Description Cavia porcellus cpo-miR-302c-3p mature miRNA
Sequence 37 - UAAGUGCUUCCAUGUUUGAGUGG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344