miRBase entry: cpo-mir-302d

Stem-loop cpo-mir-302d

Accession

MI0038724

Description

Cavia porcellus cpo-mir-302d precursor miRNA

Sequence

ACUCCGACAUGGGGCACUUGCUgcggcgugacucaaaUAAGUGCUUCCAUGUUUGAGCGC
.(((.(((((((((((((((.((.(......).))..))))))).)))))))).)))...

Structure

--A   C        -       -C  c gc 
   CUC GACAUGGG GCACUUG  Ug g  g
   ||| |||||||| |||||||  || |   
   GAG UUGUACCU CGUGAAU  ac c  u
CGC   U        U       aa  u ag

Annotation confidence Not enough data

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Genome context

DS562898.1: 11471856-11471915 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cpo-mir-302d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-302d-5p

Accession	MIMAT0047152
Description	Cavia porcellus cpo-miR-302d-5p mature miRNA
Sequence	1 - ACUCCGACAUGGGGCACUUGCU - 22
Evidence	not_experimental

Mature cpo-miR-302d-3p

Accession	MIMAT0047153
Description	Cavia porcellus cpo-miR-302d-3p mature miRNA
Sequence	38 - UAAGUGCUUCCAUGUUUGAGCGC - 60
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344