miRBase entry: cpo-mir-342

Stem-loop cpo-mir-342


Accession
MI0038738
Description
Cavia porcellus cpo-mir-342 precursor miRNA


Sequence

AGGGGUGCUAUCUGUGCUGGAGGGACAugaucaauggaauugUCUCACACAGAAAUCGCACCCGUCA
..((((((..((((((.....((((((...((....))..)))))).))))))....))))))....

Structure
--AG      --UA      CUGGA      uga  a 
    GGGUGC    UCUGUG     GGGACA   uc a
    ||||||    ||||||     ||||||   ||  
    CCCACG    AGACAC     CUCUgu   ag u
ACUG      CUAA      ----A      -ua  g 


Annotation confidence Not enough data
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Genome context
DS562969.1: 3985857-3985923 [+]

Database links

Mature cpo-miR-342-5p

Accession MIMAT0047180
Description Cavia porcellus cpo-miR-342-5p mature miRNA
Sequence 1 - AGGGGUGCUAUCUGUGCUGGAGGGACA - 27
Evidence experimental
Illumina [1]

Mature cpo-miR-342-3p

Accession MIMAT0047181
Description Cavia porcellus cpo-miR-342-3p mature miRNA
Sequence 43 - UCUCACACAGAAAUCGCACCCGUCA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344