miRBase entry: cpo-mir-381

Stem-loop cpo-mir-381


Accession
MI0038761
Description
Cavia porcellus cpo-mir-381 precursor miRNA

Literature search
1 open access papers mention cpo-mir-381
(2 sentences)

Sequence

AGCGAGGUUGCCCUUUGUAUAUUcggcuuguugacacggaaUAUACAAGGGCAAGCUCUCUGU
((.(((.((((((((.((((((((.(..........).)))))))))))))))).))).))..

Structure
--  C   G        U        g cuug 
  AG GAG UUGCCCUU GUAUAUUc g    u
  || ||| |||||||| |||||||| |     
  UC CUC AACGGGAA CAUAUaag c    u
UG  U   G        -        g acag 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1099199-1099261 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from cpo-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-381-5p

Accession MIMAT0047225
Description Cavia porcellus cpo-miR-381-5p mature miRNA
Sequence 1 - AGCGAGGUUGCCCUUUGUAUAUU - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-381-3p

Accession MIMAT0047226
Description Cavia porcellus cpo-miR-381-3p mature miRNA
Sequence 42 - UAUACAAGGGCAAGCUCUCUGU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344