miRBase entry: cpo-mir-409

Accession

MI0038765

Description

Cavia porcellus cpo-mir-409 precursor miRNA

Sequence

AGGUUACCCAAGCAACUUUGCAUCUgaacaacGAAUGUUGCUCGGUGAACCCCU
.((((..((.((((((((((...........)))).)))))).))..))))...

Structure

--A    AC  A      -    CAUC 
   GGUU  CC AGCAAC UUUG    U
   ||||  || |||||| ||||    g
   CCAA  GG UCGUUG AAGc    a
UCC    GU  C      U    aaca

Annotation confidence Not enough data

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Genome context

DS562966.1: 1117072-1117125 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from cpo-mir-409

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0047233
Description	Cavia porcellus cpo-miR-409-5p mature miRNA
Sequence	1 - AGGUUACCCAAGCAACUUUGCAUCU - 25
Evidence	experimental Illumina [1]

Accession	MIMAT0047234
Description	Cavia porcellus cpo-miR-409-3p mature miRNA
Sequence	33 - GAAUGUUGCUCGGUGAACCCCU - 54
Evidence	experimental Illumina [1]

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344