miRBase entry: cpo-mir-450a-1

Stem-loop cpo-mir-450a-1


Accession
MI0038779
Description
Cavia porcellus cpo-mir-450a-1 precursor miRNA


Sequence

UUUUGCGAUGUGUUCCUAAUAUguacuauaaauauAUUGGGAGCAUUUUGCAUGCAUa
...(((((.(((((((((((((((.......))))))))))))))).)))))......

Structure
---UUU     U               ac 
      UGCGA GUGUUCCUAAUAUgu  u
      ||||| |||||||||||||||  a
      ACGUU UACGAGGGUUAuaua  u
aUACGU     U               aa 


Annotation confidence Not enough data
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Genome context
DS562983.1: 2873102-2873159 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpo-mir-450a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-450a-5p

Accession MIMAT0047261
Description Cavia porcellus cpo-miR-450a-5p mature miRNA
Sequence 1 - UUUUGCGAUGUGUUCCUAAUAU - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-450a-3p

Accession MIMAT0047262
Description Cavia porcellus cpo-miR-450a-3p mature miRNA
Sequence 36 - AUUGGGAGCAUUUUGCAUGCAU - 57
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344